Bioinformatics Open Days 2019

Check the Conference Book here.

Braga, 20th (Workshops), 21st and 22nd February 2019

About

Bioinformatics Open Days - Braga


Bioinformatics Open Days is a student-led initiative, first held at Universidade do Minho, Braga in 2012. It aims to promote the exchange of knowledge between students, teachers and researchers from the Bioinformatics and Computational Biology fields. This event will occur at Universidade do Minho (Campus Gualtar) on the 20th (Workshops), 21st and 22nd of February 2019.

Call for Contributions


The Bioinformatics Open Days Committee invites authors willing to share their research in Bioinformatics or Computational Biology to submit abstracts for oral or poster presentation.

 

Submission Guidelines:

  • Papers must be submitted in English;
  • The manuscript must follow the following formatting rules:
    • Title: Times New Roman, size 16, centered alignment;
    • Authors: Times New Roman, size 14, centered alignment;
    • Body and Authors Affiliation: Times New Roman, size 12, justified alignment and a maximum of 350 words;
    • Document margins: top and bottom - 2,5cm, left and right - 3,0cm;
  • The “Oral” option includes a short 20 minutes presentation (in English or Portuguese), with a 5 minutes discussion; 
  • The “Poster” option allows the submitter to present a poster, from the abstract submitted, at the poster exhibition;
  • The submissions must be done via email to bod.submissoes@gmail.com

  • The submission must include the PDF and Word (or equivalent) files;
  • The submission and registration  in the event has a cost of 60 euros and includes:
    • Two lunches (21st and 22nd);
    • One dinner (21st)
    • Attendance to all the event days.

For more explicit information follow the template that may be accessed  here.

 

Important Dates:

  • Author’s submissions notification date: 4th January 2019
  • Submission Opening: 9th November 2018
  • Submission Deadline: 20th January 2019
  • Event Duration: 20th, 21st and 22nd February 2019

 

For further questioning contact us via the same email: bod.submissoes@gmail.com

Travel & Accommodation


   

How to reach the venue

   

From the Sá Carneiro Airport

The nearest airport is the Sá Carneiro Airport, located in Porto, about 50 km away.
From the airport, take the E metro line (violet): Aeroporto – Estádio do Dragão, to reach the Campanhã train station. Several trains to Braga depart from this station.
Alternatively, getBUS provides a direct bus service between the airport and the Braga coach station.

   

Sá Carneiro Airport
www.ana.pt
Phone: + 351 229 432 400

Porto Metro
www.metrodoporto.pt
Phone: +351 225 081 000

getBUS
www.getbus.eu/
Phone: +351 253 262 371

   

By Coach

Transdev
www.transdev.pt
Phone: +351 213 581 460

Arriva
www.arriva.pt
Phone: +351 253 264 693

Rodonorte
www.rodonorte.pt
Phone: +351 259 340 710

   

By Train

Information on the available rail lines to get to Braga and train schedules may be found at www.cp.pt.
The train station in Braga is a 15 minutes bus trip away from the Gualtar campus. Bus service is provided by Transportes Urbanos de Braga (TUB).

   

Public transport in Braga

If you choose to travel by plane, bus or train, your destination will either be the city's coach station or the train station. To reach the Gualtar campus, you can opt to travel by bus, using the services provided by Transportes Urbanos de Braga (TUB). These buses run about every 15 minutes.

Timetables and more information: www.tub.pt/
Phone: +351 253 606 890

   

Accommodation

   

Hotel Meliá *****
Situated just minutes from downtown Braga and the University of Minho.
Web: www.melia.com/pt
Phone: +351 253 144 000
E-mail: melia.braga@meliaportugal.com

Hotel Lamaçães ***
Located near the University of Minho, the Iberian Nanotechnology Centre, and a 5 minutes drive from Braga's historic center.
www.hotel-lamacaes.com/pt
Phone: +351 253 603 680
E-mail: info@hotel-lamacaes.com

Registration


To register in BOD 2019 please fill in this form https://bit.ly/2FWdfyt.

 

Please do not forget to proceed with the required payment and send us the payment proof as explained in the form.

 

Registrations are open until 15th February 2019!  

 

Sign up now! Do not miss this opportunity!

  

Fees

 
  

Social dinner details can be found here.

Workshops


 

Francisco Couto

Data and Text Processing in Health and Life Sciences: an example driven introductory workshop using shell scripting

This workshop intends to help Health and Life specialists or students without advanced computer science skills, to Learn, test and combine simple command line tools to retrieve data and text from web resources, to filter and mine literature, and to explore the semantics encoded in biomedical ontologies.

 

   

   

   

   

José Jiménez

Predicting protein-ligand affinities with PyTorch

This workshop aims to introduce to the basics of deep learning and usage of PyTorch, a Python Library for tensor manipulation. There will be a discussion on how such models are currently used in bioinformatics and computational chemistry and a popular application will be used as an example: the prediction of protein-ligand binding affinities.

 

   

   

   

   

Diana Lousa

Protein Structure Prediction

Although the number of experimentally determined protein structures has been continuously growing, there are still a large number of proteins whose structure is unknown. Computational structure prediction methods are powerful tools, which infer the three-dimensional structure of a protein from its amino acid sequence and are very useful in cases where experimental structure determination is difficult or even unfeasible. Homology-based modelling, which uses information on homologous protein structures to infer the structure of the target protein, is one of the most widely used methods in this field.

This workshop aims to provide a hands-on introduction to protein structure prediction. It will start with an overview of these methods, with an emphasis on homology-based modelling. Several application examples will be presented and the students will have the opportunity to perform structure prediction calculations on different test cases (including their own proteins of interest), predict the effect of mutations, and eventually be able to describe the protein action mechanism at the molecular level.

 

   

   

   

   

  

Event Program


 
 

LECTURES & PANEL DISCUSSIONS


SENSING ADAPTATION WITH GENOMICS AND BIOINFORMATICS

Lecture 1

 

Agostinho Antunes

CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Portugal

Department of Biology, Faculty of Sciences, University of Porto, Portugal


Whole genome sequencing projects can be crucial to decipher genetic disease and health, species evolution and the diversification of phenotypic traits. Here, recent results from our group retrieved from comparative evolutionary genomic analyses of varied animal species will exemplify adaptive successes to thrive into diverse ecological environments. The findings pinpoint unique molecular products of critical relevance in species evolution, diversification and conservation, but also highlight genomic novelties with relevance in environmental and biomedical research.

 

   

   

   

   

GENOMIC STORIES OF DNA MUTATION AND DAMAGE

Lecture 2

 

Nicholas Luscombe

Francis Crick Institute

University College London Genetics Institute

Okinawa Institute of Science & Technology


Nicholas Luscombe has a degree in natural sciences from the University of Cambridge, a PhD on the basis for specificity of DNA-binding proteins from the University College London, and a postdoctoral fellow on yeast transcriptional regulation from the University of Yale. In 2005 he became group leader at the EMBL-European Bioinformatics Institute where he stayed until 2012 and built a computational biology laboratory with an emphasis on genomics and gene regulation. During this time, he joined the Okinawa Institute of Science & Technology as an Adjunct Faculty to establish a small group focused on developmental regulation (2011-present). Currently, he teaches Computational Biology in the University College London Genetics Institute and holds the position of Senior Winton Group Leader at the Francis Crick Institute in London.

 

   

   

   

   

LEARNING BIOINFORMATICS IN PORTUGAL

PANEL DISCUSSION


Informal conversation with the participation of Bioinformatics Professors from different national academies, with the purpose of assessing the current picture of Bioinformatics in Portugal, mainly its evolution through time, the ongoing state of education in this area, as well as other relevant subjects.

   

   

RESEARCH IN BIOINFORMATICS

PANEL DISCUSSION


Discussion about the current status of Bioinformatic research in Portugal from the point of view of some of the biggest Bioinformatic networks in the country, namely, BioData and GenomePT.

   

   

   

   

   

Universidade do Minho Campus map


Sponsors & Partners